Last modified 2026-03-19 |
Use the Consolidated 10x Pipeline (Tutorial)
| Abbreviations Key |
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ADT | antibody-derived tag |
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| IDE | integrated development environment |
Human Immune System Explorer |
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| scRNA | single-cell RNA | |
hp | hisepy |
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| SDK | software development kit |
At a Glance
The consolidated 10x scRNA pipeline processes HISE scRNA-seq data. When you submit your sequencing data and a completed HISE submission sheet, the pipeline automatically handles alignment, quality control, metadata annotation, cell type labeling, doublet detection, and final file conversion, delivering analysis-ready H5 and H5AD files. If you have questions about the pipeline or need help using it, contact Support.
Instructions
Prepare the submission sheet
Confirm your FASTQ file upload
Submit the pipeline run
Monitor and review
1. Monitor the pipeline
2. Review outputs
Related Resources
Attach an IDE to a Study (Tutorial)
Use HISE SDK Methods and Get Help